Last updated: 2025-04-13

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Knit directory: KODAMA-Analysis/

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References

The KODAMA package has been integrated with t-SNE and UMAP to convert the KODAMA’s dissimilarity matrix in a low dimensional space.

Zinga MM, Abdel-Shafy E, Melak T, Vignoli A, Piazza S, Zerbini LF, Tenori L, Cacciatore S. KODAMA exploratory analysis in metabolic phenotyping. Front Mol Biosci. 2023 Jan 17;9:1070394.

Cacciatore S, Tenori L, Luchinat C, Bennett PR, MacIntyre DA. KODAMA: an R package for knowledge discovery and data mining. Bioinformatics. 2017 Feb 15;33(4):621-623.

Cacciatore S, Luchinat C, Tenori L. Knowledge discovery by accuracy maximization. Proc Natl Acad Sci U S A. 2014 Apr 8;111(14):5117-22.